Tools

A list of open datasets as well as tools and their source code repositories published on GitHub.

Open epilepsy datasets

ENIGMA-Epilepsy ENIGMA-Epilepsy ENIGMA-Epilepsy is dedicated to improving our understanding of in vivo neuroanatomical disruptions in people with epilepsy compared to healthy individuals	ENIGMA Toolbox ENIGMA Toolbox A repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data

Preprocessing tools

Deep Mask Deep Mask Accurate brain segmentation in malformations of cortical development	iEEG-recon iEEG-recon A modular pipeline to reconstruct iEEG electrode locations in MRI images
micapipe micapipe A semi-flexible and robust framework to process MRI images and generate ready to use modality based connectomes

Postprocessing tools

Deep FCD Deep FCD Multicenter validated and automated detection of focal cortical dysplasia using deep learning	Automated TLE Lateralization Automated TLE Lateralization An MRI-based machine learning prediction framework to lateralize hippocampal sclerosis in patients with temporal lobe epilepsy
z-brains z-brains An open software for multimodal lesion mapping in focal epilepsy	MELD Classifier MELD Classifier A neural network lesion classifier for the MELD project
BrainStat BrainStat A toolbox for statistical analysis of neuroimaging data